James Xing

@zhenyan-xing

Call me Jim! | Undergraduate Researcher | Interested in de novo protein design, protein therapeutics & protein language model

Xi'an Jiaotong University Hong Kong

Followers

Following

Public Repos

Private Repos

Language Breakdown

Lines of code distribution across 11 owned repositories

7.5M Total LOC

HTML

5,490,455 lines

73.5%

N/A

JavaScript

1,063,530 lines

14.2%

N/A

Python

505,665 lines

6.8%

N/A

CSS

178,542 lines

2.4%

N/A

Liquid

156,583 lines

2.1%

N/A

Other

74,353 lines

1.0%

N/A

I-Shaped Developer

I-shaped

Specialist — deep expertise in HTML

HTML

JavaScript

Python

CSS

Liquid

Collaboration Network

Global Impact visualization

LIVE

0 active collaborators

Repos

PRs

Growth

+18%

Top Collaborators

No collaborator data yet.

Coding Streak

Contribution activity over the past year

12 days

452

Contributions

331

Commits

Pull Requests

Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun

Based on GitHub activity

Less

Followers 7

Patrick Soga

@AJB117

zhigaoqin

@zhigaoqin

Cogito Ergo Sum

@standardgalactic

Guo Guohui

@guohuiguo

mxm

@Morphex-Mo

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Following

11 total

mengyaolichang

@mengyaolichang

Patrick Soga

@AJB117

Yu Li

@liyu95

Claude

@claude

Wenhao Gao

@wenhao-gao

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Synced via GitHub

Top Repositories

protein-classify-and-cluster

A Python pipeline for protein structure clustering (PDBs) using all-vs-all TMalign, hierarchical analysis, and secondary structure classification.

4 1

Python

alphafold3-protein-screening

A lightweight CLI tool to scan AlphaFold 3 outputs, aggregate confidence metrics into a single table, filter by user-defined thresholds, and export top-ranked structures.

3 0

Python

partial-diffusion-in-batch

2 0

Python

find_interface_hotspot

interface-hotspot finder for RFdiffusion PPI binder design using gemmi + distance-based contact scoring with residue-type weighting and optional exclusions.

2 0

Python

batch-image-renamer

Batch rename image files in a folder with flexible templates (digits + x counters), interactive messy-name filtering, safe two-phase renaming, and undo support — works on Windows/Linux/macOS.

1 0

Python

sidechainresidue

A pymol Plugin to help you identify the side chain interactions

1 0

Python

fa2end

You can use it from the result of proteinMPNN to AF3, and you can get to the result

1 0

Python

.fa-to-.json

Batch-convert single-chain FASTA (.fa/.fasta) sequences into AlphaFold Server input JSON jobs (dialect: alphafoldserver, v1)